Difference between revisions of "VolViewer"
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Note that for the windows
Note that for the windows you will need to install the corresponding Microsoft Visual C++ 2010 SP1 Redistributable Package which can be found here: [http://www.microsoft.com/download/en/details.aspx?id=8328 32bit] and [http://www.microsoft.com/download/en/details.aspx?id=13523 64bit].
Revision as of 11:52, 28 October 2011
VolViewer is an open source application for the interactive visualisation and quantification of biological data. The application is written in C++ using OpenGL and Qt.
- Real-time volume rendering using an optimized 3D texture slicing algorithm.
- Interactive transfer functions to independently adjust opacity and intensity for up to three data channels.
- Real-time per channel thresholding, brightness and contrast operators.
- On-the-fly gradient computation for local illumination.
- Iso-surface computation with surface smoothing.
- Section viewing in any orientation / position.
- Real-time volume clipping.
- 3D measurements, filters & segmentation.
- Key frame interpolation for easy movie creation.
- Stereo rendering using either quad buffer or anaglyph mode.
Requirements: An OpenGL 2.1 / GLSL 1.20 compatible GPU with a recomended 512MB of memory.
|Antirinhium Meristem||Arabidopsis Seedling||Arabidopsis Leaf (GL2:GUS expression in red)||Arabidopsis Leaf (Ath8:::GUS expression in red)|
* all data courtesy of Karen Lee 
Although we try to keep up to date builds these sometimes lag behind the SVN trunk. So if you want the latest version / features, it is best to build the application from the trunk of the SVN. The build system is based on qmake for easy cross platform compilation.
|Windows (32bit)||Windows (64bit)||Linux||MacOS X (i386/x86_64/10.5+)|
Building from source
To build from source your only pre-requisit is to have the Qt SDK installed. It is then possible to build VolViewer from source using qmake by running the following command:
from within the VolViewer/src/ folder.
Building with OMERO support
It is also possible to build VolViewer with support for the Open Microscopy Environment, please see the guide below:
VolViewer has appeared in the following:
Front cover: Handbook of Plant Science | Front cover: The Plant Cell | Royal Microscopical Society: Infocus Magazine | Bundled with the Bioptonic 3001 scanner: Bioptonics Viewer | The Guardian newspaper: 3D Fruit fly | Qt Ambassador program | Triffid Nurseries website