Difference between revisions of "VolViewer"

From BanghamLab
Jump to navigation Jump to search
Line 61: Line 61:
 
=Media/Press=
 
=Media/Press=
  
VolViewer has been used to in the following:
+
VolViewer has has appeared in the following:
  
 
* Front cover: [http://www.amazon.co.uk/Handbook-Plant-Science-Keith-Roberts/dp/0470057238/ref=sr_1_19?s=books&ie=UTF8&qid=1289321357&sr=1-19 Handbook of Plant Science]
 
* Front cover: [http://www.amazon.co.uk/Handbook-Plant-Science-Keith-Roberts/dp/0470057238/ref=sr_1_19?s=books&ie=UTF8&qid=1289321357&sr=1-19 Handbook of Plant Science]
Line 68: Line 68:
  
 
* In the Guardian newspaper: [http://www.guardian.co.uk/science/gallery/2007/sep/04/fruitflybrain#/?picture=330675671&index=1 3D Fruit fly]
 
* In the Guardian newspaper: [http://www.guardian.co.uk/science/gallery/2007/sep/04/fruitflybrain#/?picture=330675671&index=1 3D Fruit fly]
 +
 +
* Qt Ambassador program: []
  
 
=Author=
 
=Author=
  
 
* [[Jerome Avondo| Dr Jerome Avondo]]
 
* [[Jerome Avondo| Dr Jerome Avondo]]

Revision as of 14:04, 7 June 2011

Description

VolViewer.png

VolViewer is an open source application for the interactive visualisation and quantification of biological data. The application is written in C++ using OpenGL and Qt.

Features:

  • Real-time volume rendering using an optimized 3D texture slicing algorithm.
  • Interactive transfer functions to independently adjust opacity and luminance for up to three data channels.
  • Real-time per channel thresholding, brightness and contrast operators.
  • On-the-fly gradient computation for local illumination.
  • Iso-surface computation with surface smoothing.
  • Section viewing in any orientation / position.
  • Real-time volume clipping.
  • 3D measurements, filters & segmentation.
  • Key frame interpolation for easy movie creation/export by interpolating transformations, clipping and transfer function states.

Requirements: An OpenGL 2.1 / GLSL 1.20 compatible GPU with a recomended 512MB of memory.

Image Gallery / Sample Data *

VolViewer Figure2.gif VolViewer Figure3.gif VolViewer Figure5.gif VolViewer Figure7.gif
Antirinhium Meristem Antirinhium Seedling Arabidopsis Leaf (GL2:GUS expression in red) Arabidopsis Meristem (Ath8:::GUS expression in red)
Download Download Download Download

* all data courtesy of Karen Lee [1]

Download

Windows (32bit) | Windows (64bit) | Linux (64bit)** | MacOS X (i386/x86_64/10.5+)**

** Although we try to keep up to date builds for Linux and MacOSX these sometimes lag behind the windows builds. So if you want the latest version / features, it is best to build the application from the trunk of the SVN. The build process relies on qmake to allow for easy cross platform compilation.

Source Code

https://cmpdartsvr1.cmp.uea.ac.uk/banghamlabSVN/VolViewer/

User Manual

User Manual

Video Demos

Interaction_Demo3.png</wikiflv>
This video shows the interactive visualisation capabilities of VolViewer.
Measure1_Demo.png</wikiflv>
This video illustrates how to capture the shape of cell outlines using the measurement tool.
Measure2_Demo.png</wikiflv>
This video shows the measurement and clipping capabilities of VolViewer to capture a 3D cell.

Media/Press

VolViewer has has appeared in the following:

  • Bundled with the commercial Optical Projection Tomography Bioptonic 3001 scanner: Bioptonics Viewer
  • Qt Ambassador program: []

Author