Difference between revisions of "VolViewer"

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Nvidia Geforce 8 and above.
 
Nvidia Geforce 8 and above.
  
=Image Gallery=
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=Image Gallery / Sample Data=
  
[[Image:VolViewer_Figure2.gif|128px]] [[Image:VolViewer_Figure3.gif|256px]] [[Image:VolViewer_Figure5.gif|128px]] [[Image:VolViewer_Figure7.gif|128px]]  
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{| border="1"  cellspacing="0" cellpadding="0"
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|-
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| align="center"|[[Image:VolViewer_Figure2.gif|128px]]||[[Image:VolViewer_Figure3.gif|256px]]||[[Image:VolViewer_Figure5.gif|128px]]||[[Image:VolViewer_Figure7.gif|128px]]  
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|-
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| align="center"| '''Antirinhium Meristem''' || align="center"| '''Antirinhium Seedling''' || align="center"| '''Arabidopsis Leaf''' (GL2:GUS expression in red) || align="center"| '''Arabidopsis Meristem''' (Ath8:::GUS expression in red)
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| align="center"| [http://cmpdartsvr1.cmp.uea.ac.uk/downloads/papers/PlantCellOPT/Antiriniuhm_Meristem(r512g110usmall).zip Download] || align="center"| [http://cmpdartsvr1.cmp.uea.ac.uk/downloads/papers/PlantCellOPT/Arab_Seedling(174).zip Download]|| align="center"| [http://cmpdartsvr1.cmp.uea.ac.uk/downloads/papers/PlantCellOPT/Arab_LeafGL2_GUS(624).zip Download] || align="center"|[http://cmpdartsvr1.cmp.uea.ac.uk/downloads/papers/PlantCellOPT/ArabidopsisLeafAth8_GUS(460).zip Download]
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<nowiki>*</nowiki> all data courtesy of Karen Lee [mailto:kareen.lee@bbsrc.ac.uk]
 
<nowiki>*</nowiki> all data courtesy of Karen Lee [mailto:kareen.lee@bbsrc.ac.uk]

Revision as of 12:40, 20 January 2011

Description

VolViewer.png

VolViewer is an open source application for the interactive visualisation and quantification of biological data. The application is written in C++ using OpenGL and Qt.

Features:

  • Real-time volume rendering using an optimized 3D texture slicing algorithm.
  • Interactive transfer functions to independently adjust opacity and luminance for up to three data channels.
  • Real-time per channel thresholding, brightness and contrast operators.
  • On-the-fly gradient computation for local illumination.
  • Iso-surface computation with surface smoothing.
  • Section viewing in any orientation / position.
  • Real-time volume clipping.
  • 3D measurements.

Requirements:

Nvidia Geforce 8 and above.

Image Gallery / Sample Data

VolViewer Figure2.gif VolViewer Figure3.gif VolViewer Figure5.gif VolViewer Figure7.gif
Antirinhium Meristem Antirinhium Seedling Arabidopsis Leaf (GL2:GUS expression in red) Arabidopsis Meristem (Ath8:::GUS expression in red)
Download Download Download Download

* all data courtesy of Karen Lee [1]

Download

Windows (32bit) | Windows (64bit) | Linux (64bit) | MacOS X (i386/x86_64/10.5+)

User Manual

User Manual

Source Code

https://cmpdartsvr1.cmp.uea.ac.uk/banghamlabSVN/VolViewer/

Author

Video Demo

This video demo shows the interactive visualisation capabilities of VolViewer.

<wikiflv width="640" height="480" logo="false">Interaction_Demo3.flv|Interaction_Demo3.png</wikiflv>

These two videos show the 3D measurement capabilities of VolViewer.

<wikiflv width="640" height="480" logo="false">Measure1_Demo.flv|Measure1_Demo.png</wikiflv>

<wikiflv width="640" height="480" logo="false">Measure2_Demo.flv|Measure2_Demo.png</wikiflv>

Media/Press

VolViewer has been used to in the following:

  • Bundled with the commercial Optical Projection Tomography Bioptonic 3001 scanner: Bioptonics Viewer