Software: Difference between revisions

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|width="20%"| <imgicon>VolViewer.png|160px|VolViewer</imgicon>
|width="20%"| <big>'''[[VolViewer]]'''</big> <br>(Windows, Mac, Linux)
For interacting with 3D volume images. <br>'''Details'''<br>''Download''
|width="60%"|  The C++ code exploits high end graphics cards by making extensive use of [http://www.opengl.org/ OpenGL] and [http://qt.nokia.com/products/ Qt]. It is open-source and forms a part of the Open Microscopy Environment ([http://openmicroscopy.org/site OME]).
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|width="20%"| <imgicon>KennawayCoverPicture.jpg|160px|GFtbox</imgicon>  
|width="20%"| <imgicon>KennawayCoverPicture.jpg|160px|GFtbox</imgicon>  
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For modelling the growth of shapes from patterns of gene activity.  <br>'''Details'''<br>''Download''
For modelling the growth of shapes from patterns of gene activity.  <br>'''Details'''<br>''Download''
|width="60%"|  An implementation of the Growing Polarised Tissue Framework for understanding and modelling the relationship between gene activity and the growth of shapes such leaves, flowers and animal embryos.  
|width="60%"|  An implementation of the Growing Polarised Tissue Framework for understanding and modelling the relationship between gene activity and the growth of shapes such leaves, flowers and animal embryos.  
|}
{| border="0" cellpadding="5" cellspacing="5"
|width="20%"| <imgicon>VolViewer.png|160px|VolViewer</imgicon>
|width="20%"| <big>'''[[VolViewer]]'''</big> <br>(Windows, Mac, Linux)
For interacting with 3D volume images. <br>'''Details'''<br>''Download''
|width="60%"|  The C++ code exploits high end graphics cards by making extensive use of [http://www.opengl.org/ OpenGL] and [http://qt.nokia.com/products/ Qt]. It is open-source and forms a part of the Open Microscopy Environment ([http://openmicroscopy.org/site OME]).
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Revision as of 14:11, 3 May 2011

Toolboxes for research

<imgicon>KennawayCoverPicture.jpg|160px|GFtbox</imgicon> GFtbox
(Matlab: PC, Mac, Linux)

For modelling the growth of shapes from patterns of gene activity.
Details
Download

An implementation of the Growing Polarised Tissue Framework for understanding and modelling the relationship between gene activity and the growth of shapes such leaves, flowers and animal embryos.
<imgicon>VolViewer.png|160px|VolViewer</imgicon> VolViewer
(Windows, Mac, Linux)

For interacting with 3D volume images.
Details
Download

The C++ code exploits high end graphics cards by making extensive use of OpenGL and Qt. It is open-source and forms a part of the Open Microscopy Environment (OME).

Packages to which we contribute

<imgicon>BioformatsConverterZip.png|160px|BioformatsConverter</imgicon> BioformatsConverter
(PC: Windows)

For converting microscope manufacturer proprietary file formats.
Details
Download

This tool allows for the batch conversion of microscope manufacturer proprietary file formats, to the open source OME-TIFF standard.
<imgicon>OMERO_DIAGRAM.jpg|160px|OMERO</imgicon> OMERO
(Matlab: PC, Mac, Linux)

For working with the OME image database.
Details
Download

Open Microscopy Environment Remote Objects. for visualising, managing, and annotating scientific image data.


Algorithms, demonstrations and tools