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=Bangham Lab - Home= | =Bangham Lab - Home= | ||
<span style="color: DarkGreen">Current activity: a collaboration with the [http://rico-coen.jic.ac.uk/index.php/Main_Page CoenLab] with the aim of understanding how patterns of gene activity in biological organs influence the developing shape. The BanghamLab is focussed on the computational underpinning: concepts captured in growth models, visualisation and analysis.</span> | <span style="color: DarkGreen">'''Current activity: a collaboration''' with the [http://rico-coen.jic.ac.uk/index.php/Main_Page CoenLab] with the aim of understanding how patterns of gene activity in biological organs influence the developing shape. The BanghamLab is focussed on the computational underpinning: concepts captured in growth models, visualisation and analysis.</span> | ||
=<span style="color:DarkGreen;">Computational biology toolboxes= | =<span style="color:DarkGreen;">Computational biology toolboxes= | ||
==<span style="color:DarkGreen;">GFtbox== | ==<span style="color:DarkGreen;">GFtbox== | ||
Revision as of 08:43, 30 May 2011
Bangham Lab - Home
Current activity: a collaboration with the CoenLab with the aim of understanding how patterns of gene activity in biological organs influence the developing shape. The BanghamLab is focussed on the computational underpinning: concepts captured in growth models, visualisation and analysis.
Computational biology toolboxes
GFtbox
| <imgicon>GPT_thumbnail2.png|120px|GFtbox</imgicon> |
For modelling the growth of shapes. |
GFtbox is an implementation of the Growing Polarised Tissue Framework for understanding and modelling the relationship between gene activity and the growth of shapes such leaves, flowers and animal embryos (PLoS Computational Biology, in press). The GPT-framework was used to capture an understanding of (to model) the growing Snapdragon flower. The Snapdragon model was validated by comparing the results with new mutant flowers.; |
VolViewer
| <imgicon>VolViewer-logo.png|120px|VolViewer</imgicon> | For viewing and measuring 3D volume images. See Details, Download (Windows, Mac, Linux) |
VolViewer makes extensive use of OpenGL and Qt. It is open-source and is compatible with the Open Microscopy Environment (OME). |