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|width="50%"|  VolViewer makes extensive use of [http://www.opengl.org/ OpenGL] and [http://qt.nokia.com/products/ Qt]. It is open-source and forms a part of the Open Microscopy Environment ([http://openmicroscopy.org/site OME]).
|width="50%"|  VolViewer makes extensive use of [http://www.opengl.org/ OpenGL] and [http://qt.nokia.com/products/ Qt]. It is open-source and forms a part of the Open Microscopy Environment ([http://openmicroscopy.org/site OME]).
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|}
==<span style="color:DarkGreen;">Computational biology systems to which we contribute==
===<span style="color:DarkGreen;">BioformatsConverter===
{| border="0" cellpadding="5" cellspacing="5"
|- valign="top"
|width="10%"| <imgicon>BioformatsConverterZip.png|100px|BioformatsConverter</imgicon>
|width="40%"| (PC: Windows)
For converting microscope manufacturer proprietary file formats. <br>[[BioformatsConverter|''Details'']]<br>''Download''
|width="50%"|  This tool allows for the batch conversion of microscope manufacturer proprietary file formats, to the open source OME-TIFF standard.
|}
===<span style="color:DarkGreen;">OMERO===
{| border="0" cellpadding="5" cellspacing="5"
|- valign="top"
|width="10%"| <imgicon>OMERO_DIAGRAM.jpg|100px|OMERO</imgicon>
|width="40%"| (web client - SQL server)
For working with the OME image database.  <br>''Details''<br>''Download''
|width="50%"|  [http://openmicroscopy.org/site/support/omero4 Open Microscopy Environment Remote Objects (OMERO).] for visualising, managing, and annotating scientific image data.
|}
=Algorithms, demonstrations and tools=

Revision as of 11:02, 26 May 2011

Current

Computational biology toolboxes

GFtbox

<imgicon>GPT_thumbnail2.png|120px|GFtbox</imgicon>

For modelling the growth of shapes.

See Details, Tutorials and Download

(PC, Mac, Linux, uses Matlab
Matlab 30 day free trial and
student edition)

GFtbox is an implementation of the Growing Polarised Tissue Framework for understanding and modelling the relationship between gene activity and the growth of shapes such leaves, flowers and animal embryos (PLoS Computational Biology, in press).
The GPT-framework was used to capture an understanding of (to model) the growing Snapdragon flower.
The Snapdragon model was validated by comparing the results with new mutant flowers.;

VolViewer

<imgicon>VolViewer-logo.png|120px|VolViewer</imgicon> For viewing and measuring 3D volume images.

See Details, Download

(PC: Windows, your computer or a server)

VolViewer makes extensive use of OpenGL and Qt. It is open-source and forms a part of the Open Microscopy Environment (OME).
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