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|width="10%"| <imgicon>GPT_thumbnail.png|120px|GFtbox</imgicon> | |width="10%"| <imgicon>GPT_thumbnail.png|120px|GFtbox</imgicon> | ||
|width="40%"| | |width="40%"| | ||
For modelling the growth of shapes. <br><br>See [[GFtbox|''Details'']], [https://sourceforge.net/p/gftbox/ ''Download'' | For modelling the growth of shapes. <br><br>See [[GFtbox|''Details'']], [[GFtbox Tutorial pages|''Tutorials'']] and [https://sourceforge.net/p/gftbox/ ''Download'']<br><br> | ||
(PC, Mac, Linux, uses Matlab<br>[http://www.mathworks.com/products/matlab/tryit.html Matlab 30 day free trial] and [http://www.mathworks.com/academia/student_version/?s_cid=global_nav student edition]) | (PC, Mac, Linux, uses Matlab<br>[http://www.mathworks.com/products/matlab/tryit.html Matlab 30 day free trial] and [http://www.mathworks.com/academia/student_version/?s_cid=global_nav student edition]) | ||
|width="50%"| | |width="50%"| ''GFtbox'' is an implementation of the Growing Polarised Tissue Framework for understanding and modelling the relationship between gene activity and the growth of shapes such leaves, flowers and animal embryos. | ||
|} | |} | ||
==<span style="color:DarkGreen;">VolViewer== | ==<span style="color:DarkGreen;">VolViewer== | ||
{| border="0" cellpadding="5" cellspacing="5" | {| border="0" cellpadding="5" cellspacing="5" | ||
|width="10%"| <imgicon>VolViewer-logo.png|120px|VolViewer</imgicon> | |width="10%"| <imgicon>VolViewer-logo.png|120px|VolViewer</imgicon> | ||
|width="40%"| | |width="40%"|For viewing and measuring 3D volume images. <br><br>See [[VolViewer|''Details'']], [[VolViewer|''Download'']]<br><br> | ||
For viewing and measuring 3D volume images. <br>[[VolViewer|''Details'']] | (PC: Windows, your computer or a server) | ||
|width="50%"| | |width="50%"| VolViewer makes extensive use of [http://www.opengl.org/ OpenGL] and [http://qt.nokia.com/products/ Qt]. It is open-source and forms a part of the Open Microscopy Environment ([http://openmicroscopy.org/site OME]). | ||
|} | |} | ||
Revision as of 13:10, 25 May 2011
Computational biology toolboxes
GFtbox
| <imgicon>GPT_thumbnail.png|120px|GFtbox</imgicon> |
For modelling the growth of shapes. |
GFtbox is an implementation of the Growing Polarised Tissue Framework for understanding and modelling the relationship between gene activity and the growth of shapes such leaves, flowers and animal embryos. |
VolViewer
| <imgicon>VolViewer-logo.png|120px|VolViewer</imgicon> | For viewing and measuring 3D volume images. See Details, Download (PC: Windows, your computer or a server) |
VolViewer makes extensive use of OpenGL and Qt. It is open-source and forms a part of the Open Microscopy Environment (OME). |
Computational biology systems to which we contribute
BioformatsConverter
| <imgicon>BioformatsConverterZip.png|100px|BioformatsConverter</imgicon> | (PC: Windows)
For converting microscope manufacturer proprietary file formats. |
This tool allows for the batch conversion of microscope manufacturer proprietary file formats, to the open source OME-TIFF standard. |
OMERO
| <imgicon>OMERO_DIAGRAM.jpg|100px|OMERO</imgicon> | (web client - SQL server)
For working with the OME image database. |
Open Microscopy Environment Remote Objects (OMERO). for visualising, managing, and annotating scientific image data. |