"Mutational spaces for leaf shape and size"

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Recreating Figures

To create the figures shown in the manuscript “Mutational spaces for leaf shape and size”, S. Bensmihen, A. I. Hanna, N. B. Langlade, J. L. Micol, A. Bangham, and E. S. Coen, HFSP Journal, 2008, please follow the instructions below.

These figures were created using Matlab 2006b version 7.3.0.267 running on Windows XP.

Installing the toolbox

To install the toolbox, simply unzip the zip file you downloaded from the website. In that folder you will find 2 folders, the first one will be the ‘AAMToolbox’ folder (this contains the Matlab files that runs the toolbox). The second folder is named ‘PRJ_Arabid_Antirrh’. This is the project folder that contains all the data for the manuscript. To install the toolbox, from the Matlab prompt type

>>pathtool

Click the ‘Add with subfolders’ button and then select the AAMToolbox folder. Save your new path and return to Matlab. You have now installed the toolbox. REMEMBER, ANY CHANGES YOU MAKE TO THE TOOLBOX DIRECTORY WILL REQUIRE YOU TO RESET THE PATH USING PATHOOL.

Creating Figures

Figure 1: From the Matlab prompt type

>> figure_1_points_around_leaf

And select “LE50template_04_05_06.temp_dat” from the Templates directory. The colours are your choice.

Figure 2: From the Matlab prompt type

>>figure_2_pc_effects

• Select the folder ‘PRJ_Arabid_Antirrh\StatisticalModels\LE50Template_04_05_06\Set_1\ImageList_18’ for model (Ler only, not scaled). • Next choose the PCs you want to display (1 to 5 in our case). • Next choose to use the mean from the model and finally select 2SD range. (The vertical and horizontal ranges can be changed but the default gets you started).