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=Toolboxes for research=
=Toolboxes for research=
{| border="1" cellpadding="1" cellspacing="1"
{| border="0" cellpadding="5" cellspacing="5"
|- valign="top"
|- valign="top"
|width="20%"| <imgicon>VolViewer.png|160px|VolViewer</imgicon>  
|width="20%"| <imgicon>VolViewer.png|160px|VolViewer</imgicon>  
|width="20%"| <big>'''[[VolViewer]]'''</big> <br>(PC: Windows)
|width="20%"| <big>'''[[VolViewer]]'''</big> <br>(PC: Windows)
For interacting with 3D volume images. <br>Download
For interacting with 3D volume images. <br>'''Details'''<br>''Download''
|width="60%"|  The C++ code exploits high end graphics cards by making extensive use of [http://www.opengl.org/ OpenGL] and [http://qt.nokia.com/products/ Qt]. It is open-source and forms a part of the Open Microscopy Environment ([http://openmicroscopy.org/site OME]).
|width="60%"|  The C++ code exploits high end graphics cards by making extensive use of [http://www.opengl.org/ OpenGL] and [http://qt.nokia.com/products/ Qt]. It is open-source and forms a part of the Open Microscopy Environment ([http://openmicroscopy.org/site OME]).
|- valign="top"
|- valign="top"
|width="20%"| <imgicon>VolViewer.png|160px|VolViewer</imgicon>  
|width="20%"| <imgicon>KennawayCoverPicture.jpg|160px|GFtbox</imgicon>  
|width="20%"| <big>'''[[VolViewer]]'''</big> <br>(PC: Windows)
|width="20%"| <big>'''[[GFtbox]]'''</big> <br>(Matlab: PC, Mac, Linux)
For interacting with 3D volume images. <br>Download
For modelling the growth of shapes from patterns of gene activity. <br>'''Details'''<br>''Download''
|width="60%"|  The C++ code exploits high end graphics cards by making extensive use of [http://www.opengl.org/ OpenGL] and [http://qt.nokia.com/products/ Qt]. It is open-source and forms a part of the Open Microscopy Environment ([http://openmicroscopy.org/site OME]).
|width="60%"|  An implementation of the Growing Polarised Tissue Framework for understanding and modelling the relationship between gene activity and the growth of shapes such leaves, flowers and animal embryos.  
|}
 
 
{| border="0" cellpadding="1" cellspacing="1"
| <imgicon>VolViewer.png|160px|VolViewer</imgicon>
|align="top"|  <big>'''[[VolViewer]]:'''</big> (PC: Windows) For interacting with 3D volume images.
|| The C++ code exploits high end graphics cards by making extensive use of [http://www.opengl.org/ OpenGL] and [http://qt.nokia.com/products/ Qt]. It is open-source and forms a part of the Open Microscopy Environment ([http://openmicroscopy.org/site OME]).
|}
|}


=Packages to which we contribute=
{| border="0" cellpadding="5" cellspacing="5"
|- valign="top"
|width="20%"| <imgicon>BioformatsConverterZip.png|160px|BioformatsConverter</imgicon>
|width="20%"| <big>'''[[BioformatsConverter]]'''</big> <br>(PC: Windows)
For converting microscope manufacturer proprietary file formats. <br>'''Details'''<br>''Download''
|width="60%"|  This tool allows for the batch conversion of microscope manufacturer proprietary file formats, to the open source OME-TIFF standard.


{| border="0" cellpadding="5" cellspacing="3"
|- valign="top"
| <imgicon>KennawayCoverPicture.jpg|160px|GFtbox</imgicon> || <big>'''[[GFtbox]]:'''</big> (Matlab on Win, Mac, Linux, etc) An implementation of the Growing Polarised Tissue Framework for understanting and modelling the relationship between gene activity and the growth of shapes such leaves, flowers, animal embryos and other organs.
|width="20%"| <imgicon>OMERO_DIAGRAM.jpg|160px|OMERO</imgicon>  
|}
|width="20%"| <big>'''[[OMERO]]'''</big> <br>(Matlab: PC, Mac, Linux)
 
For working with the OME image database.  <br>'''Details'''<br>''Download''
=Packages to which we contribute=
|width="60%"|  [http://openmicroscopy.org/site/support/omero4 Open Microscopy Environment Remote Objects.] for visualising, managing, and annotating scientific image data.
{| border="0" cellpadding="5" cellspacing="3"
| <imgicon>BioformatsConverterZip.png|160px|BioformatsConverter</imgicon> || <big>'''[[BioformatsConverter]]:'''</big> This tool allows for the batch conversion of microscope manufacturer proprietary file formats, to the open source OME-TIFF standard.
|}
|}


{| border="0" cellpadding="5" cellspacing="3"
| <imgicon>OMERO_DIAGRAM.jpg|160px|OMERO</imgicon> || 
<big>'''[[OMERO]]:'''</big> [http://openmicroscopy.org/site/support/omero4 Open Microscopy Environment Remote Objects.]
|}


=Algorithms, demonstrations and tools=
=Algorithms, demonstrations and tools=

Revision as of 18:54, 29 April 2011

Toolboxes for research

<imgicon>VolViewer.png|160px|VolViewer</imgicon> VolViewer
(PC: Windows)

For interacting with 3D volume images.
Details
Download

The C++ code exploits high end graphics cards by making extensive use of OpenGL and Qt. It is open-source and forms a part of the Open Microscopy Environment (OME).
<imgicon>KennawayCoverPicture.jpg|160px|GFtbox</imgicon> GFtbox
(Matlab: PC, Mac, Linux)

For modelling the growth of shapes from patterns of gene activity.
Details
Download

An implementation of the Growing Polarised Tissue Framework for understanding and modelling the relationship between gene activity and the growth of shapes such leaves, flowers and animal embryos.

Packages to which we contribute

<imgicon>BioformatsConverterZip.png|160px|BioformatsConverter</imgicon> BioformatsConverter
(PC: Windows)

For converting microscope manufacturer proprietary file formats.
Details
Download

This tool allows for the batch conversion of microscope manufacturer proprietary file formats, to the open source OME-TIFF standard.
<imgicon>OMERO_DIAGRAM.jpg|160px|OMERO</imgicon> OMERO
(Matlab: PC, Mac, Linux)

For working with the OME image database.
Details
Download

Open Microscopy Environment Remote Objects. for visualising, managing, and annotating scientific image data.


Algorithms, demonstrations and tools

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