Software: Difference between revisions
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=Toolboxes for research= | =Toolboxes for research= | ||
{| border="0" cellpadding=" | {| border="1" cellpadding="1" cellspacing="1" | ||
| <imgicon>VolViewer.png|160px|VolViewer</imgicon> || <big>'''[[VolViewer]]:'''</big> (PC: Windows) For interacting with 3D volume images | |- valign="top" | ||
|width="20%"| <imgicon>VolViewer.png|160px|VolViewer</imgicon> | |||
|width="20%"| <big>'''[[VolViewer]]'''</big> <br>(PC: Windows) | |||
For interacting with 3D volume images. <br>Download | |||
|width="60%"| The C++ code exploits high end graphics cards by making extensive use of [http://www.opengl.org/ OpenGL] and [http://qt.nokia.com/products/ Qt]. It is open-source and forms a part of the Open Microscopy Environment ([http://openmicroscopy.org/site OME]). | |||
|- valign="top" | |||
|width="20%"| <imgicon>VolViewer.png|160px|VolViewer</imgicon> | |||
|width="20%"| <big>'''[[VolViewer]]'''</big> <br>(PC: Windows) | |||
For interacting with 3D volume images. <br>Download | |||
|width="60%"| The C++ code exploits high end graphics cards by making extensive use of [http://www.opengl.org/ OpenGL] and [http://qt.nokia.com/products/ Qt]. It is open-source and forms a part of the Open Microscopy Environment ([http://openmicroscopy.org/site OME]). | |||
|} | |||
{| border="0" cellpadding="1" cellspacing="1" | |||
| <imgicon>VolViewer.png|160px|VolViewer</imgicon> | |||
|align="top"| <big>'''[[VolViewer]]:'''</big> (PC: Windows) For interacting with 3D volume images. | |||
|| The C++ code exploits high end graphics cards by making extensive use of [http://www.opengl.org/ OpenGL] and [http://qt.nokia.com/products/ Qt]. It is open-source and forms a part of the Open Microscopy Environment ([http://openmicroscopy.org/site OME]). | |||
|} | |} | ||
{| border="0" cellpadding="5" cellspacing="3" | {| border="0" cellpadding="5" cellspacing="3" | ||
| <imgicon> | | <imgicon>KennawayCoverPicture.jpg|160px|GFtbox</imgicon> || <big>'''[[GFtbox]]:'''</big> (Matlab on Win, Mac, Linux, etc) An implementation of the Growing Polarised Tissue Framework for understanting and modelling the relationship between gene activity and the growth of shapes such leaves, flowers, animal embryos and other organs. | ||
|} | |} | ||
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{| border="0" cellpadding="5" cellspacing="3" | {| border="0" cellpadding="5" cellspacing="3" | ||
| <imgicon>BioformatsConverterZip.png|160px|BioformatsConverter</imgicon> || <big>'''[[BioformatsConverter]]:'''</big> This tool allows for the batch conversion of microscope manufacturer proprietary file formats, to the open source OME-TIFF standard. | | <imgicon>BioformatsConverterZip.png|160px|BioformatsConverter</imgicon> || <big>'''[[BioformatsConverter]]:'''</big> This tool allows for the batch conversion of microscope manufacturer proprietary file formats, to the open source OME-TIFF standard. | ||
|} | |||
{| border="0" cellpadding="5" cellspacing="3" | |||
| <imgicon>OMERO_DIAGRAM.jpg|160px|OMERO</imgicon> || | |||
<big>'''[[OMERO]]:'''</big> [http://openmicroscopy.org/site/support/omero4 Open Microscopy Environment Remote Objects.] | |||
|} | |} | ||
=Algorithms, demonstrations and tools= | =Algorithms, demonstrations and tools= | ||
Revision as of 18:26, 29 April 2011
Toolboxes for research
| <imgicon>VolViewer.png|160px|VolViewer</imgicon> | VolViewer (PC: Windows) For interacting with 3D volume images. |
The C++ code exploits high end graphics cards by making extensive use of OpenGL and Qt. It is open-source and forms a part of the Open Microscopy Environment (OME). |
| <imgicon>VolViewer.png|160px|VolViewer</imgicon> | VolViewer (PC: Windows) For interacting with 3D volume images. |
The C++ code exploits high end graphics cards by making extensive use of OpenGL and Qt. It is open-source and forms a part of the Open Microscopy Environment (OME). |
| 160px|VolViewer</imgicon> | VolViewer: (PC: Windows) For interacting with 3D volume images. | The C++ code exploits high end graphics cards by making extensive use of OpenGL and Qt. It is open-source and forms a part of the Open Microscopy Environment (OME). |
| 160px|GFtbox</imgicon> | GFtbox: (Matlab on Win, Mac, Linux, etc) An implementation of the Growing Polarised Tissue Framework for understanting and modelling the relationship between gene activity and the growth of shapes such leaves, flowers, animal embryos and other organs. |
Packages to which we contribute
| 160px|BioformatsConverter</imgicon> | BioformatsConverter: This tool allows for the batch conversion of microscope manufacturer proprietary file formats, to the open source OME-TIFF standard. |
| 160px|OMERO</imgicon> |