Software: Difference between revisions
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|width="10%"| <imgicon>BioformatsConverterZip.png|100px|BioformatsConverter</imgicon> | |width="10%"| <imgicon>BioformatsConverterZip.png|100px|BioformatsConverter</imgicon> | ||
|width="40%"| (PC: Windows) | |width="40%"| (PC: Windows) | ||
For converting microscope manufacturer proprietary file formats. <br> | For converting microscope manufacturer proprietary file formats. <br>[[BioformatsConverter|''Details'']]<br>''Download'' | ||
|width="50%"| This tool allows for the batch conversion of microscope manufacturer proprietary file formats, to the open source OME-TIFF standard. | |width="50%"| This tool allows for the batch conversion of microscope manufacturer proprietary file formats, to the open source OME-TIFF standard. | ||
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|width="10%"| <imgicon>OMERO_DIAGRAM.jpg|100px|OMERO</imgicon> | |width="10%"| <imgicon>OMERO_DIAGRAM.jpg|100px|OMERO</imgicon> | ||
|width="40%"| (web client - SQL server) | |width="40%"| (web client - SQL server) | ||
For working with the OME image database. <br> | For working with the OME image database. <br>''Details''<br>''Download'' | ||
|width="50%"| [http://openmicroscopy.org/site/support/omero4 Open Microscopy Environment Remote Objects (OMERO).] for visualising, managing, and annotating scientific image data. | |width="50%"| [http://openmicroscopy.org/site/support/omero4 Open Microscopy Environment Remote Objects (OMERO).] for visualising, managing, and annotating scientific image data. | ||
|} | |} | ||
Revision as of 17:01, 13 May 2011
Computational biology toolboxes
GFtbox
| <imgicon>GPT-logo-460.png|80px|GFtbox</imgicon> | (PC, Mac, Linux, uses Matlab which is available as a 30 day free trial and there is a student edition)
For modelling the growth of shapes from patterns of growth factor activity. |
An implementation of the Growing Polarised Tissue Framework for understanding and modelling the relationship between gene activity and the growth of shapes such leaves, flowers and animal embryos. |
VolViewer
| <imgicon>VolViewer-logo.png|80px|VolViewer</imgicon> | (PC: Windows, your computer or a server) | Written C++ it makes extensive use of OpenGL and Qt. It is open-source and forms a part of the Open Microscopy Environment (OME). |
Computational biology systems to which we contribute
BioformatsConverter
| <imgicon>BioformatsConverterZip.png|100px|BioformatsConverter</imgicon> | (PC: Windows)
For converting microscope manufacturer proprietary file formats. |
This tool allows for the batch conversion of microscope manufacturer proprietary file formats, to the open source OME-TIFF standard. |
OMERO
| <imgicon>OMERO_DIAGRAM.jpg|100px|OMERO</imgicon> | (web client - SQL server)
For working with the OME image database. |
Open Microscopy Environment Remote Objects (OMERO). for visualising, managing, and annotating scientific image data. |