Software
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Computational biology toolboxes
GFtbox
| <imgicon>GPT-logo-460.png|80px|GFtbox</imgicon> | (Matlab: PC, Mac, Linux)
For modelling the growth of shapes from patterns of growth factor activity. |
An implementation of the Growing Polarised Tissue Framework for understanding and modelling the relationship between gene activity and the growth of shapes such leaves, flowers and animal embryos. |
VolViewer
| <imgicon>VolViewer-logo.png|80px|VolViewer</imgicon> | (PC: Windows, web client - graphics processor on server)
For viewing and measuring 3D volume images. |
The C++ code exploits high end graphics cards by making extensive use of OpenGL and Qt. It is open-source and forms a part of the Open Microscopy Environment (OME). |
Computational biology systems to which we contribute
BioformatsConverter
| <imgicon>BioformatsConverterZip.png|100px|BioformatsConverter</imgicon> | (PC: Windows)
For converting microscope manufacturer proprietary file formats. |
This tool allows for the batch conversion of microscope manufacturer proprietary file formats, to the open source OME-TIFF standard. |
OMERO
| <imgicon>OMERO_DIAGRAM.jpg|100px|OMERO</imgicon> | (web client - SQL server)
For working with the OME image database. |
Open Microscopy Environment Remote Objects (OMERO). for visualising, managing, and annotating scientific image data. |