VolViewer access from Matlab - Revision history

AndrewBangham at 17:21, 16 March 2012

2012-03-16T17:21:40Z

← Older revision		Revision as of 17:21, 16 March 2012
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	***VO=imshowVOL(VO, 'PathTo', PathName); % where Pathname is the path to the '''directory''' containing the image stack.		***VO=imshowVOL(VO, 'PathTo', PathName); % where Pathname is the path to the '''directory''' containing the image stack.
	===VolViewer auxilary library - uses the class library===		===VolViewer auxilary library - uses the class library===
			*'''VolVTemplateEditor'''.m
			**AAMToolbox helper. VolVTemplateEditor read an image stack and, optionally an MSR (shape result file) file, into VolViewer and Matlab. It outputs the data in two data structures, an MSR data structure and a data structure compatible with the AAMToolbox.

	===VolViewer demonstrations===		===VolViewer demonstrations===

AndrewBangham at 17:16, 16 March 2012

2012-03-16T17:16:49Z

← Older revision		Revision as of 17:16, 16 March 2012
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	help functionname		help functionname
	*'''VolViewer'''.m		*'''VolViewer'''.m
	**''VOL=~~'''~~VolViewer~~'''~~;'' % creates a VolViewer object		**''VOL=VolViewer;'' % creates a VolViewer object
	**Usage		**Usage
	*** data.VO=VolViewer(1,'D:\VolViewer_x64','D:\VolViewer_x64');<br>where 'D:\VolViewer_x64' is the location of VolViewer on the current computer.		*** data.VO=VolViewer(1,'D:\VolViewer_x64','D:\VolViewer_x64');<br>where 'D:\VolViewer_x64' is the location of VolViewer on the current computer.

AndrewBangham at 17:16, 16 March 2012

2012-03-16T17:16:14Z

← Older revision		Revision as of 17:16, 16 March 2012
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	===VolViewer class libary===		===VolViewer class libary===
			Within Matlab, detailed help on each function can be obtained by right-clicking the name or typing
			help functionname
	*'''VolViewer'''.m		*'''VolViewer'''.m
	**''VOL=VolViewer;'' % creates a VolViewer object		**''VOL='''VolViewer''';'' % creates a VolViewer object
	*'''set'''.m		**Usage
	**''VOL=set(VOL,'attribute',value);'' % sets an attribute (field) in the VolViewer object. More than one attribute:value pair can be set in one call.		*** data.VO=VolViewer(1,'D:\VolViewer_x64','D:\VolViewer_x64');<br>where 'D:\VolViewer_x64' is the location of VolViewer on the current computer.
	*'''get'''.m		**Access functions
	**''attribs=get(VOL,'attribute1','attribute2');'' % gets a attributes (field) from the VolViewer object. More than one can be retrieved in one call. ''attribs'' is a cell array.		**'''set'''.m
	*'''display'''.m		***''VOL=set(VOL,'attribute',value);'' % sets an attribute (field) in the VolViewer object. More than one attribute:value pair can be set in one call.
	**''VOL'' %This overloads the normal display routine. Thus, leaving off the semicolon causes the object to be displayed		**'''get'''.m
			***''attribs=get(VOL,'attribute1','attribute2');'' % gets a attributes (field) from the VolViewer object. More than one can be retrieved in one call. ''attribs'' is a cell array.
			**'''display'''.m
			***''VOL'' %This overloads the normal display routine. Thus, leaving off the semicolon causes the object to be displayed
			*'''commandsVOL'''.m
			**[VOL,SoftError]=commandsVOL(VOL,varargin)<br>
			**Where VOL is a VolViewer object, and varargin is a series of VolViewer arguments, e.g. 'set_channels(0, 0, 0)','open_msr('somepath\file.msr')'
			*'''imshowVOL'''.m
			**''VOL=imshowVOL(VOL,'PathToImages','E:\MATLAB\3D Arabidopsis Leaf Shape Models\SN20#1L1_x0p98y0p98z0p80conf');'' %Where 'SN20#1L1_x0p98y0p98z0p80conf' is the name of a directory containing a stack of png images to be displayed in VolViewer. The command will '''automatically create a VolViewer object''' - which should be used in any further calls to VolViewer. Unfortunately, there is (at present) no way for Matlab to verify that VolViewer is actually running, so don't close it causually.
			**Usage
			***VO=imshowVOL(VO, 'PathTo', PathName); % where Pathname is the path to the '''directory''' containing the image stack.
			===VolViewer auxilary library - uses the class library===

	~~===VolViewer auxilary library - uses the class library===~~
	*'''imshowVOL'''.m
	**''VOL=imshowVOL( 'PathToImages','E:\MATLAB\3D Arabidopsis Leaf Shape Models\SN20#1L1_x0p98y0p98z0p80conf');'' %Where 'SN20#1L1_x0p98y0p98z0p80conf' is the name of a directory containing a stack of png images to be displayed in VolViewer. The command will '''automatically create a VolViewer object''' - which should be used in any further calls to VolViewer. Unfortunately, there is (at present) no way for Matlab to verify that VolViewer is actually running, so don't close it causually.

	===VolViewer demonstrations===		===VolViewer demonstrations===

AndrewBangham at 18:38, 28 February 2012

2012-02-28T18:38:34Z

← Older revision		Revision as of 18:38, 28 February 2012
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			[[VolViewer Scripting in more detail\|Return to VolViewer Scripting]]<br>
			[[VolViewer\|Return to VolViewer]]<br>

	===VolViewer class libary===		===VolViewer class libary===
	*'''VolViewer'''.m		*'''VolViewer'''.m

AndrewBangham at 18:36, 28 February 2012

2012-02-28T18:36:18Z

← Older revision		Revision as of 18:36, 28 February 2012
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	===VolViewer auxilary library - uses the class library===		===VolViewer auxilary library - uses the class library===
	*'''imshowVOL'''.m		*'''imshowVOL'''.m
	**''VOL=imshowVOL( 'PathToImages','E:\MATLAB\3D Arabidopsis Leaf Shape Models\SN20#1L1_x0p98y0p98z0p80conf');'' %Where 'SN20#1L1_x0p98y0p98z0p80conf' is the name of a directory containing a stack of png images		**''VOL=imshowVOL( 'PathToImages','E:\MATLAB\3D Arabidopsis Leaf Shape Models\SN20#1L1_x0p98y0p98z0p80conf');'' %Where 'SN20#1L1_x0p98y0p98z0p80conf' is the name of a directory containing a stack of png images to be displayed in VolViewer. The command will '''automatically create a VolViewer object''' - which should be used in any further calls to VolViewer. Unfortunately, there is (at present) no way for Matlab to verify that VolViewer is actually running, so don't close it causually.

	===VolViewer demonstrations===		===VolViewer demonstrations===

AndrewBangham: Created page with '===VolViewer class libary=== *'''VolViewer'''.m **''VOL=VolViewer;'' % creates a VolViewer object *'''set'''.m **''VOL=set(VOL,'attribute',value);'' % sets an attribute (field) i…'

2012-02-28T18:33:39Z

Created page with '===VolViewer class libary=== *'''VolViewer'''.m **''VOL=VolViewer;'' % creates a VolViewer object *'''set'''.m **''VOL=set(VOL,'attribute',value);'' % sets an attribute (field) i…'

New page

===VolViewer class libary===
*'''VolViewer'''.m
**''VOL=VolViewer;'' % creates a VolViewer object
*'''set'''.m
**''VOL=set(VOL,'attribute',value);'' % sets an attribute (field) in the VolViewer object. More than one attribute:value pair can be set in one call.
*'''get'''.m
**''attribs=get(VOL,'attribute1','attribute2');'' % gets a attributes (field) from the VolViewer object. More than one can be retrieved in one call. ''attribs'' is a cell array.
*'''display'''.m
**''VOL'' %This overloads the normal display routine. Thus, leaving off the semicolon causes the object to be displayed

===VolViewer auxilary library - uses the class library===
*'''imshowVOL'''.m
**''VOL=imshowVOL( 'PathToImages','E:\MATLAB\3D Arabidopsis Leaf Shape Models\SN20#1L1_x0p98y0p98z0p80conf');'' %Where 'SN20#1L1_x0p98y0p98z0p80conf' is the name of a directory containing a stack of png images

===VolViewer demonstrations===