http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?action=history&feed=atom&title=GFtbox_Tutorial_pages
GFtbox Tutorial pages - Revision history
2026-04-18T10:57:54Z
Revision history for this page on the wiki
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http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=GFtbox_Tutorial_pages&diff=6705&oldid=prev
AndrewBangham: /* 2 B */
2014-06-13T06:34:18Z
<p><span class="autocomment">2 B</span></p>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|Submodel 2. Growth in the region that has no arrows is isotropic and, as result, the outgrowth is blunt.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|Submodel 2. Growth in the region that has no arrows is isotropic and, as result, the outgrowth is blunt.</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|width="200pt"|<wikiflv width="300" height="300" logo="false" loop="true">GPT_tut_interaction_example_20110601-0007.flv|GPT_tut_interaction_example_20110601-0006_Last.png</wikiflv><br></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|width="200pt"|<wikiflv width="300" height="300" logo="false"loop="true"></div></td></tr>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>===2 C Illustrating independent ways to form shapes and the use of submodels. ===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>===2 C Illustrating independent ways to form shapes and the use of submodels. ===</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Conclusion: interesting shapes can be generated either by '''patterns of differential growth''' or''' patterns of local growth axe'''s. <br><br></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Conclusion: interesting shapes can be generated either by '''patterns of differential growth''' or''' patterns of local growth axe'''s. <br><br></div></td></tr>
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AndrewBangham
http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=GFtbox_Tutorial_pages&diff=6704&oldid=prev
AndrewBangham: /* 1 A */
2014-06-13T06:33:15Z
<p><span class="autocomment">1 A</span></p>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|width="700pt"|[[In the beginning Uniform|Tutorial on uniform growth.]]<br><br>Consider a disc shaped canvas (tissue) in which the '''specified growth is uniform''', isotropic and on both sides.<br><br>'''Into what shape will the disc grow?'''<br><br>This model is as simple as it gets. Notice that, during growth, the mesh is automatically subdivided. Notice also that the final surface is not quite flat. This is because, to allow it to deform in 3D, it is not flat initially. There are options to initialise a flat mesh and others to force it to remain flat - see options on the GUI (hover over controls to get prompts).<br><br></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|width="700pt"|[[In the beginning Uniform|Tutorial on uniform growth.]]<br><br>Consider a disc shaped canvas (tissue) in which the '''specified growth is uniform''', isotropic and on both sides.<br><br>'''Into what shape will the disc grow?'''<br><br>This model is as simple as it gets. Notice that, during growth, the mesh is automatically subdivided. Notice also that the final surface is not quite flat. This is because, to allow it to deform in 3D, it is not flat initially. There are options to initialise a flat mesh and others to force it to remain flat - see options on the GUI (hover over controls to get prompts).<br><br></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>In the absence of a polariser (there is no polariser in this example) growth will be isotropic, in other words growth in the plane of the canvas will be the average of what is specified for ''Kapar'' and ''Kaper'' (''A'' side) and ''Kbpar'' and ''Kbper'' (''B'' side).<br></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>In the absence of a polariser (there is no polariser in this example) growth will be isotropic, in other words growth in the plane of the canvas will be the average of what is specified for ''Kapar'' and ''Kaper'' (''A'' side) and ''Kbpar'' and ''Kbper'' (''B'' side).<br></div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|width="<del style="font-weight: bold; text-decoration: none;">300pt</del>"|<wikiflv width="300" height="300" logo="false" loop="true" background="white">GPT_tut_uniform_20110527-0003.flv|GPT_tut_uniform_20110527-0003_Last.png</wikiflv></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|width="<ins style="font-weight: bold; text-decoration: none;">200pt</ins>"|<wikiflv width="300" height="300" logo="false" loop="true" background="white">GPT_tut_uniform_20110527-0003.flv|GPT_tut_uniform_20110527-0003_Last.png</wikiflv></div></td></tr>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>===1 B===</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>===1 B===</div></td></tr>
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AndrewBangham
http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=GFtbox_Tutorial_pages&diff=6137&oldid=prev
AndrewBangham at 17:38, 14 January 2013
2013-01-14T17:38:21Z
<p></p>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Ready Reference Manual|'''''Ready Reference''''' Manual]]<br><br></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Ready Reference Manual|'''''Ready Reference''''' Manual]]<br><br></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">__NOTOC__</del></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div> </div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The models shown in these tutorials illustrate features of the GFtbox software. They are not designed to understand the Growing Polarised Tissue Framework which is better done with [[GFtbox Example pages|Examples from our papers]].<br><br></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>The models shown in these tutorials illustrate features of the GFtbox software. They are not designed to understand the Growing Polarised Tissue Framework which is better done with [[GFtbox Example pages|Examples from our papers]].<br><br></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Viewing these pages. Some versions of ''Firefox'' and ''Explorer'' do not create satisfactory prints even though you can view the pages with no problems. ''Chrome'' does appear to produce good printouts.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Viewing these pages. Some versions of ''Firefox'' and ''Explorer'' do not create satisfactory prints even though you can view the pages with no problems. ''Chrome'' does appear to produce good printouts.</div></td></tr>
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AndrewBangham
http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=GFtbox_Tutorial_pages&diff=6129&oldid=prev
PaulSoutham at 11:04, 14 January 2013
2013-01-14T11:04:00Z
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<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|width="400pt"|[[Image:wikiModelShapespace.png|<del style="font-weight: bold; text-decoration: none;">300px</del>|none]]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|width="400pt"|[[Image:wikiModelShapespace.png|<ins style="font-weight: bold; text-decoration: none;">400px</ins>|none]]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|width="200pt"|<wikiflv width="300" height="300" logo="false" loop="true">GPT_tut_interaction_example_20110601-0002.flv|GPT_tut_interaction_example_20110601-0002.png</wikiflv><br></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|width="200pt"|<wikiflv width="300" height="300" logo="false" loop="true">GPT_tut_interaction_example_20110601-0002.flv|GPT_tut_interaction_example_20110601-0002.png</wikiflv><br></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><left>(Marks) The shape of growing ''Arabidopsis'' leaves projected into a shape space represented by the two principal components. (Lines) The shape of a computational model of a growing ''Arabidopsis'' leaf projected into the same space.</center></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><left>(Marks) The shape of growing ''Arabidopsis'' leaves projected into a shape space represented by the two principal components. (Lines) The shape of a computational model of a growing ''Arabidopsis'' leaf projected into the same space.</center></div></td></tr>
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PaulSoutham
http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=GFtbox_Tutorial_pages&diff=6128&oldid=prev
PaulSoutham at 11:03, 14 January 2013
2013-01-14T11:03:17Z
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<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|width="400pt"|[[Image:<del style="font-weight: bold; text-decoration: none;">GPT_RetainStrainAndCut_20110603-000050-0005</del>.png|300px|none]]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|width="400pt"|[[Image:<ins style="font-weight: bold; text-decoration: none;">wikiModelShapespace</ins>.png|300px|none]]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|width="200pt"|<wikiflv width="300" height="300" logo="false" loop="true">GPT_tut_interaction_example_20110601-0002.flv|GPT_tut_interaction_example_20110601-0002.png</wikiflv><br></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|width="200pt"|<wikiflv width="300" height="300" logo="false" loop="true">GPT_tut_interaction_example_20110601-0002.flv|GPT_tut_interaction_example_20110601-0002.png</wikiflv><br></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><left>(Marks) The shape of growing ''Arabidopsis'' leaves projected into a shape space represented by the two principal components. (Lines) The shape of a computational model of a growing ''Arabidopsis'' leaf projected into the same space.</center></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><left>(Marks) The shape of growing ''Arabidopsis'' leaves projected into a shape space represented by the two principal components. (Lines) The shape of a computational model of a growing ''Arabidopsis'' leaf projected into the same space.</center></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td></tr>
</table>
PaulSoutham
http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=GFtbox_Tutorial_pages&diff=6127&oldid=prev
PaulSoutham at 11:02, 14 January 2013
2013-01-14T11:02:46Z
<p></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 12:02, 14 January 2013</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l177">Line 177:</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|- valign="top"</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|- valign="top"</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>|width="400pt"|<del style="font-weight: bold; text-decoration: none;">something here</del></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>|width="400pt"|<ins style="font-weight: bold; text-decoration: none;">[[Image:GPT_RetainStrainAndCut_20110603-000050-0005.png|300px|none]]</ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|width="200pt"|<wikiflv width="300" height="300" logo="false" loop="true">GPT_tut_interaction_example_20110601-0002.flv|GPT_tut_interaction_example_20110601-0002.png</wikiflv><br></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|width="200pt"|<wikiflv width="300" height="300" logo="false" loop="true">GPT_tut_interaction_example_20110601-0002.flv|GPT_tut_interaction_example_20110601-0002.png</wikiflv><br></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><left>(Marks) The shape of growing ''Arabidopsis'' leaves projected into a shape space represented by the two principal components. (Lines) The shape of a computational model of a growing ''Arabidopsis'' leaf projected into the same space.</center></div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div><left>(Marks) The shape of growing ''Arabidopsis'' leaves projected into a shape space represented by the two principal components. (Lines) The shape of a computational model of a growing ''Arabidopsis'' leaf projected into the same space.</center></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>|}</div></td></tr>
</table>
PaulSoutham
http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=GFtbox_Tutorial_pages&diff=6096&oldid=prev
AndrewBangham at 10:41, 10 December 2012
2012-12-10T10:41:58Z
<p></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 11:41, 10 December 2012</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l8">Line 8:</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>__NOTOC__</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>__NOTOC__</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>The models shown in these tutorials illustrate features of the GFtbox software. They are not designed to understand the Growing Polarised Tissue Framework which is better done with [[GFtbox Example pages|Examples from our papers]].<br></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>The models shown in these tutorials illustrate features of the GFtbox software. They are not designed to understand the Growing Polarised Tissue Framework which is better done with [[GFtbox Example pages|Examples from our papers]].<ins style="font-weight: bold; text-decoration: none;"><br></ins><br></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Viewing these pages. Some versions of ''Firefox'' and ''Explorer'' do not create satisfactory prints even though you can view the pages with no problems. ''Chrome'' does appear to produce good printouts.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>Viewing these pages. Some versions of ''Firefox'' and ''Explorer'' do not create satisfactory prints even though you can view the pages with no problems. ''Chrome'' does appear to produce good printouts.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Three ways to use ''GFtbox''=</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Three ways to use ''GFtbox''=</div></td></tr>
</table>
AndrewBangham
http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=GFtbox_Tutorial_pages&diff=6095&oldid=prev
AndrewBangham at 16:16, 6 December 2012
2012-12-06T16:16:03Z
<p></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<col class="diff-content" />
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 17:16, 6 December 2012</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l18">Line 18:</td>
<td colspan="2" class="diff-lineno">Line 18:</td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#[[Ready Reference Manual#Snapshots|Multiple Figures for publication]] '''colours and viewpoints.'''</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#[[Ready Reference Manual#Snapshots|Multiple Figures for publication]] '''colours and viewpoints.'''</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#[[Ready Reference Manual#Movies|Movies for publication and web]] '''codecs compression and Powerpoint.'''</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#[[Ready Reference Manual#Movies|Movies for publication and web]] '''codecs compression and Powerpoint.'''</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>#<span style="color: "Alabama Crimson">Quality and accuracy</span></div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>#<span style="color: "Alabama Crimson"><ins style="font-weight: bold; text-decoration: none;">'''</ins>Quality and accuracy<ins style="font-weight: bold; text-decoration: none;">'''</ins></span></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>##[[Mesh: tradeoff |Mesh: tradeoff]] between memory/speed and accuracy. '''Increasing the number of vertices in specific regions'''</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>##[[Mesh: tradeoff |Mesh: tradeoff]] between memory/speed and accuracy. '''Increasing the number of vertices in specific regions'''</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>##[[Time: tradeoff|Time: tradeoff]] between speed and accuracy. '''Checking that time steps are small enough'''.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>##[[Time: tradeoff|Time: tradeoff]] between speed and accuracy. '''Checking that time steps are small enough'''.</div></td></tr>
</table>
AndrewBangham
http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=GFtbox_Tutorial_pages&diff=6094&oldid=prev
AndrewBangham at 16:15, 6 December 2012
2012-12-06T16:15:17Z
<p></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<col class="diff-content" />
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 17:15, 6 December 2012</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l18">Line 18:</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#[[Ready Reference Manual#Snapshots|Multiple Figures for publication]] '''colours and viewpoints.'''</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#[[Ready Reference Manual#Snapshots|Multiple Figures for publication]] '''colours and viewpoints.'''</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#[[Ready Reference Manual#Movies|Movies for publication and web]] '''codecs compression and Powerpoint.'''</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#[[Ready Reference Manual#Movies|Movies for publication and web]] '''codecs compression and Powerpoint.'''</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>#Quality and accuracy</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>#<ins style="font-weight: bold; text-decoration: none;"><span style="color: "Alabama Crimson"></ins>Quality and accuracy<ins style="font-weight: bold; text-decoration: none;"></span></ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>##[[Mesh: tradeoff |Mesh: tradeoff]] between memory/speed and accuracy. '''Increasing the number of vertices in specific regions'''</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>##[[Mesh: tradeoff |Mesh: tradeoff]] between memory/speed and accuracy. '''Increasing the number of vertices in specific regions'''</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>##[[Time: tradeoff|Time: tradeoff]] between speed and accuracy. '''Checking that time steps are small enough'''.</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>##[[Time: tradeoff|Time: tradeoff]] between speed and accuracy. '''Checking that time steps are small enough'''.</div></td></tr>
</table>
AndrewBangham
http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=GFtbox_Tutorial_pages&diff=6093&oldid=prev
AndrewBangham at 16:11, 6 December 2012
2012-12-06T16:11:53Z
<p></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">← Older revision</td>
<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 17:11, 6 December 2012</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Hints and Tips=</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>=Hints and Tips=</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#[[Ready Reference Manual|Ready Reference Manual]] worth printing it includes details on taking snapshots and movies (and solving problems)</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#[[Ready Reference Manual|Ready Reference Manual]] worth printing it includes details on taking snapshots and movies (and solving problems)</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>#[[<del style="font-weight: bold; text-decoration: none;">Multiple Figures for publication</del>|Multiple Figures for publication]] '''colours and viewpoints.'''</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>#[[<ins style="font-weight: bold; text-decoration: none;">Ready Reference Manual#Snapshots</ins>|Multiple Figures for publication]] '''colours and viewpoints.'''</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>#[[Movies <del style="font-weight: bold; text-decoration: none;">for publication</del>|Movies for publication and web]] '''codecs compression and Powerpoint.'''</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>#[[<ins style="font-weight: bold; text-decoration: none;">Ready Reference Manual#</ins>Movies|Movies for publication and web]] '''codecs compression and Powerpoint.'''</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#Quality and accuracy</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>#Quality and accuracy</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>##[[Mesh: tradeoff |Mesh: tradeoff]] between memory/speed and accuracy. '''Increasing the number of vertices in specific regions'''</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>##[[Mesh: tradeoff |Mesh: tradeoff]] between memory/speed and accuracy. '''Increasing the number of vertices in specific regions'''</div></td></tr>
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AndrewBangham