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	<id>http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?action=history&amp;feed=atom&amp;title=Documenting_our_software</id>
	<title>Documenting our software - Revision history</title>
	<link rel="self" type="application/atom+xml" href="http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?action=history&amp;feed=atom&amp;title=Documenting_our_software"/>
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	<updated>2026-05-04T06:17:37Z</updated>
	<subtitle>Revision history for this page on the wiki</subtitle>
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	<entry>
		<id>http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=Documenting_our_software&amp;diff=6007&amp;oldid=prev</id>
		<title>AndrewBangham at 20:39, 28 October 2012</title>
		<link rel="alternate" type="text/html" href="http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=Documenting_our_software&amp;diff=6007&amp;oldid=prev"/>
		<updated>2012-10-28T20:39:31Z</updated>

		<summary type="html">&lt;p&gt;&lt;/p&gt;
&lt;table style=&quot;background-color: #fff; color: #202122;&quot; data-mw=&quot;interface&quot;&gt;
				&lt;col class=&quot;diff-marker&quot; /&gt;
				&lt;col class=&quot;diff-content&quot; /&gt;
				&lt;col class=&quot;diff-marker&quot; /&gt;
				&lt;col class=&quot;diff-content&quot; /&gt;
				&lt;tr class=&quot;diff-title&quot; lang=&quot;en&quot;&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;← Older revision&lt;/td&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;Revision as of 21:39, 28 October 2012&lt;/td&gt;
				&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot; id=&quot;mw-diff-left-l1&quot;&gt;Line 1:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 1:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;[[Software|Return to Software]]&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;[[Software|Return to Software]]&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;==Maintaining colours when copying Matlab code into the wiki==&lt;/div&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;==Maintaining colours when copying Matlab code into the wiki==&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;diff-marker&quot; data-marker=&quot;−&quot;&gt;&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;The simplest is to use  &lt;/div&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot; data-marker=&quot;+&quot;&gt;&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;To produce a wiki page such as [[Full freshly minted interaction function|this]]. &lt;/ins&gt;The simplest is to use  &lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;  webify_interaction_function(filename)&lt;/div&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;  webify_interaction_function(filename)&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;from the DArT_Toolshed. Change directory into the project then call the function. It will put an HTML copy of the function into the same directory which can be copied and pasted directly into the wiki. (Note - in the wiki, indented text is rendered verbatim, e.g. the function name above.)&lt;/div&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;from the DArT_Toolshed. Change directory into the project then call the function. It will put an HTML copy of the function into the same directory which can be copied and pasted directly into the wiki. (Note - in the wiki, indented text is rendered verbatim, e.g. the function name above.)&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;br&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;br&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;==Finding toolbox dependencies and collecting everything a toolbox needs into a single directory==&lt;/div&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;==Finding toolbox dependencies and collecting everything a toolbox needs into a single directory==&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-side-deleted&quot;&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot; data-marker=&quot;+&quot;&gt;&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;This provides a way of distributing a toolbox without providing access to the entire &#039;&#039;DArT_Toolshed&#039;&#039; by finding all the dependencies of a toolbox and copying any that are not actually in the toolbox directory into a folder within the toolbox directory.&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;Use&lt;/div&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;Use&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;  myDepFun(mfile,toolboxDirectory)&lt;/div&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;  myDepFun(mfile,toolboxDirectory)&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;diff-marker&quot; data-marker=&quot;−&quot;&gt;&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;which is in the &#039;&#039;DArT_Toolshed\ToolBag&#039;&#039;. &#039;&#039;myDepFun&#039;&#039; recursively (slowly) finds all the&#039;&#039; .m&#039;&#039; files on which &#039;&#039;mfile&#039;&#039; depends. Those that are not in the&#039;&#039; toolboxDirectory&#039;&#039; will be copied into a subdirectory of &#039;&#039;toolboxDirectory&#039;&#039; so that a zipfile of &lt;del style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;the whole directory &lt;/del&gt;will include all the files needed by the toolbox. (CARE: if the mfile depends on a Matlab class library, i.e. directory name begins with @, then the class library must be copied intact beforehand - read the help on &#039;&#039;myDepFun&#039;&#039;.)&lt;/div&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot; data-marker=&quot;+&quot;&gt;&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;which is in the &#039;&#039;DArT_Toolshed\ToolBag&#039;&#039;. &#039;&#039;myDepFun&#039;&#039; recursively (slowly) finds all the&#039;&#039; .m&#039;&#039; files on which &#039;&#039;mfile&#039;&#039; depends. Those that are not in the&#039;&#039; toolboxDirectory&#039;&#039; will be copied into a subdirectory of &#039;&#039;toolboxDirectory&#039;&#039; so that a zipfile of &lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;&#039;&#039; toolboxDirectory&#039;&#039; &lt;/ins&gt;will include all the files needed by the toolbox. (CARE: if the &lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;&#039;&#039;&lt;/ins&gt;mfile&lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;&#039;&#039; &lt;/ins&gt;depends on a Matlab class library, i.e. directory name &lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;that &lt;/ins&gt;begins with @, then the class library must be copied intact beforehand - read the help on &#039;&#039;myDepFun&#039;&#039;.)&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;  myDepFun(&amp;#039;AAMToolbox&amp;#039;,&amp;#039;ShapeModelToolbox&amp;#039;);&lt;/div&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;  myDepFun(&amp;#039;AAMToolbox&amp;#039;,&amp;#039;ShapeModelToolbox&amp;#039;);&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;took 50 minutes to assemble the files into the current directory&lt;/div&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;took 50 minutes to assemble the files into the current directory&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</summary>
		<author><name>AndrewBangham</name></author>
	</entry>
	<entry>
		<id>http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=Documenting_our_software&amp;diff=6008&amp;oldid=prev</id>
		<title>AndrewBangham at 20:32, 28 October 2012</title>
		<link rel="alternate" type="text/html" href="http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=Documenting_our_software&amp;diff=6008&amp;oldid=prev"/>
		<updated>2012-10-28T20:32:00Z</updated>

		<summary type="html">&lt;p&gt;&lt;/p&gt;
&lt;table style=&quot;background-color: #fff; color: #202122;&quot; data-mw=&quot;interface&quot;&gt;
				&lt;col class=&quot;diff-marker&quot; /&gt;
				&lt;col class=&quot;diff-content&quot; /&gt;
				&lt;col class=&quot;diff-marker&quot; /&gt;
				&lt;col class=&quot;diff-content&quot; /&gt;
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				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;← Older revision&lt;/td&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;Revision as of 21:32, 28 October 2012&lt;/td&gt;
				&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot; id=&quot;mw-diff-left-l8&quot;&gt;Line 8:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 8:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;Use&lt;/div&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;Use&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;  myDepFun(mfile,toolboxDirectory)&lt;/div&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;  myDepFun(mfile,toolboxDirectory)&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;diff-marker&quot; data-marker=&quot;−&quot;&gt;&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;which is in the &#039;&#039;DArT_Toolshed\ToolBag&#039;&#039;. &#039;&#039;myDepFun&#039;&#039; recursively (slowly) finds all the&#039;&#039; .m&#039;&#039; files on which &#039;&#039;mfile&#039;&#039; depends. Those that are not in the&#039;&#039; toolboxDirectory&#039;&#039; will be copied into a subdirectory of &#039;&#039;toolboxDirectory&#039;&#039; so that a zipfile of the whole directory will include all the files needed by the toolbox.&lt;/div&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot; data-marker=&quot;+&quot;&gt;&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;which is in the &#039;&#039;DArT_Toolshed\ToolBag&#039;&#039;. &#039;&#039;myDepFun&#039;&#039; recursively (slowly) finds all the&#039;&#039; .m&#039;&#039; files on which &#039;&#039;mfile&#039;&#039; depends. Those that are not in the&#039;&#039; toolboxDirectory&#039;&#039; will be copied into a subdirectory of &#039;&#039;toolboxDirectory&#039;&#039; so that a zipfile of the whole directory will include all the files needed by the toolbox. &lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;(CARE: if the mfile depends on a Matlab class library, i.e. directory name begins with @, then the class library must be copied intact beforehand - read the help on &#039;&#039;myDepFun&#039;&#039;.)&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;  myDepFun(&amp;#039;AAMToolbox&amp;#039;,&amp;#039;ShapeModelToolbox&amp;#039;);&lt;/div&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;  myDepFun(&amp;#039;AAMToolbox&amp;#039;,&amp;#039;ShapeModelToolbox&amp;#039;);&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;took 50 minutes to assemble the files into the current directory&lt;/div&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;took 50 minutes to assemble the files into the current directory&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</summary>
		<author><name>AndrewBangham</name></author>
	</entry>
	<entry>
		<id>http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=Documenting_our_software&amp;diff=6009&amp;oldid=prev</id>
		<title>AndrewBangham at 10:13, 28 October 2012</title>
		<link rel="alternate" type="text/html" href="http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=Documenting_our_software&amp;diff=6009&amp;oldid=prev"/>
		<updated>2012-10-28T10:13:04Z</updated>

		<summary type="html">&lt;p&gt;&lt;/p&gt;
&lt;table style=&quot;background-color: #fff; color: #202122;&quot; data-mw=&quot;interface&quot;&gt;
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				&lt;col class=&quot;diff-content&quot; /&gt;
				&lt;tr class=&quot;diff-title&quot; lang=&quot;en&quot;&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;← Older revision&lt;/td&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #202122; text-align: center;&quot;&gt;Revision as of 11:13, 28 October 2012&lt;/td&gt;
				&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot; id=&quot;mw-diff-left-l8&quot;&gt;Line 8:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 8:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;Use&lt;/div&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;Use&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;  myDepFun(mfile,toolboxDirectory)&lt;/div&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot;&gt;&lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;  myDepFun(mfile,toolboxDirectory)&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class=&quot;diff-marker&quot; data-marker=&quot;−&quot;&gt;&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;which is in the &#039;&#039;DArT_Toolshed\ToolBag&#039;&#039;. &#039;&#039;myDepFun&#039;&#039; recursively finds all the&#039;&#039; .m&#039;&#039; files on which &#039;&#039;mfile&#039;&#039; depends. Those that are not in the&#039;&#039; toolboxDirectory&#039;&#039; will be copied into a subdirectory of &#039;&#039;toolboxDirectory&#039;&#039; so that a zipfile of the whole directory will include all the files needed by the toolbox.&lt;/div&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot; data-marker=&quot;+&quot;&gt;&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;which is in the &#039;&#039;DArT_Toolshed\ToolBag&#039;&#039;. &#039;&#039;myDepFun&#039;&#039; recursively &lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;(slowly) &lt;/ins&gt;finds all the&#039;&#039; .m&#039;&#039; files on which &#039;&#039;mfile&#039;&#039; depends. Those that are not in the&#039;&#039; toolboxDirectory&#039;&#039; will be copied into a subdirectory of &#039;&#039;toolboxDirectory&#039;&#039; so that a zipfile of the whole directory will include all the files needed by the toolbox.&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-side-deleted&quot;&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot; data-marker=&quot;+&quot;&gt;&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt; myDepFun(&#039;AAMToolbox&#039;,&#039;ShapeModelToolbox&#039;);&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-side-deleted&quot;&gt;&lt;/td&gt;&lt;td class=&quot;diff-marker&quot; data-marker=&quot;+&quot;&gt;&lt;/td&gt;&lt;td style=&quot;color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;took 50 minutes to assemble the files into the current directory&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</summary>
		<author><name>AndrewBangham</name></author>
	</entry>
	<entry>
		<id>http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=Documenting_our_software&amp;diff=6006&amp;oldid=prev</id>
		<title>AndrewBangham: Created page with &#039;Return to Software&lt;br&gt;&lt;br&gt; ==Maintaining colours when copying Matlab code into the wiki== The simplest is to use   webify_interaction_function(filename) from the DAr…&#039;</title>
		<link rel="alternate" type="text/html" href="http://cmpdartsvr3-v.uea.ac.uk/wiki/BanghamLab/index.php?title=Documenting_our_software&amp;diff=6006&amp;oldid=prev"/>
		<updated>2012-10-27T17:38:57Z</updated>

		<summary type="html">&lt;p&gt;Created page with &amp;#039;&lt;a href=&quot;/wiki/BanghamLab/index.php/Software&quot; title=&quot;Software&quot;&gt;Return to Software&lt;/a&gt;&amp;lt;br&amp;gt;&amp;lt;br&amp;gt; ==Maintaining colours when copying Matlab code into the wiki== The simplest is to use   webify_interaction_function(filename) from the DAr…&amp;#039;&lt;/p&gt;
&lt;p&gt;&lt;b&gt;New page&lt;/b&gt;&lt;/p&gt;&lt;div&gt;[[Software|Return to Software]]&amp;lt;br&amp;gt;&amp;lt;br&amp;gt;&lt;br /&gt;
==Maintaining colours when copying Matlab code into the wiki==&lt;br /&gt;
The simplest is to use &lt;br /&gt;
 webify_interaction_function(filename)&lt;br /&gt;
from the DArT_Toolshed. Change directory into the project then call the function. It will put an HTML copy of the function into the same directory which can be copied and pasted directly into the wiki. (Note - in the wiki, indented text is rendered verbatim, e.g. the function name above.)&lt;br /&gt;
&lt;br /&gt;
==Finding toolbox dependencies and collecting everything a toolbox needs into a single directory==&lt;br /&gt;
Use&lt;br /&gt;
 myDepFun(mfile,toolboxDirectory)&lt;br /&gt;
which is in the &amp;#039;&amp;#039;DArT_Toolshed\ToolBag&amp;#039;&amp;#039;. &amp;#039;&amp;#039;myDepFun&amp;#039;&amp;#039; recursively finds all the&amp;#039;&amp;#039; .m&amp;#039;&amp;#039; files on which &amp;#039;&amp;#039;mfile&amp;#039;&amp;#039; depends. Those that are not in the&amp;#039;&amp;#039; toolboxDirectory&amp;#039;&amp;#039; will be copied into a subdirectory of &amp;#039;&amp;#039;toolboxDirectory&amp;#039;&amp;#039; so that a zipfile of the whole directory will include all the files needed by the toolbox.&lt;/div&gt;</summary>
		<author><name>AndrewBangham</name></author>
	</entry>
</feed>