BanghamLab - User contributions [en]

Links

2014-10-28T16:39:50Z

Keg06xau:

* [http://www.cmp.uea.ac.uk/ School of Computing Science, University of East Anglia.]
* [http://www.uea.ac.uk/ University of East Anglia]

MediaWiki:Sidebar

2014-10-28T15:59:10Z

Keg06xau:

Gallery

2014-10-28T15:50:49Z

Keg06xau:

{| border="1" cellpadding="5" align="center" style="background:#fff; font-size:14px;"
||
<center>
<gallery width="512" height="512" showarrows="true" showcarousel="true" showinfopane="true" timed="true" delay="6000">
Cycdich.jpg|A growth model of a snapdragon mutant lacking CYC and DICH, which yields flowers with five-fold symmetry.
Arabidopsis_Leaf_ATH8bbg.png|Mutant Arabidopsis leaf with malformed veins.
Grandison-Simulation.png|Snapshot from a simulation of the growth of microtubules within a cell.
PaulProjectPic.png|Manual selection of cells from 3D imaging data, using a haptic pen and a 3D display.
Pierre_project_image.jpg|False-colour highlighting of the positions of leaf hairs on a volumetric image of an Arabidopsis leaf.</gallery>
</center>
|}

Collaborators

2014-10-28T15:37:28Z

Keg06xau:

Collaborators

2014-10-28T15:36:42Z

Keg06xau:

Gallery

2014-10-28T15:11:22Z

Keg06xau:

{| border="1" cellpadding="5" align="center" style="background:#fff; font-size:14px;"
||
<center>
<gallery width="512" height="512" showarrows="true" showcarousel="true" showinfopane="true" timed="true" delay="6000">
Cycdich.jpg|This is the description for picture1
Arabidopsis_Leaf_ATH8bbg.png|This is the description for picture1
Grandison-Simulation.png|This is the description for picture1
PaulProjectPic.png|This is the description for picture1
Pierre_project_image.jpg|This is the description for picture1
</gallery>
</center>
|}

Collaborators

2014-10-27T14:09:01Z

Keg06xau:

Labmembers

2014-10-27T14:03:03Z

Keg06xau:

Collaborators

2014-10-27T13:53:29Z

Keg06xau:

Collaborators

2014-10-27T13:41:51Z

Keg06xau:

Main Page

2014-10-27T12:03:32Z

Keg06xau:

=Computational biology=

----

==[[Software#Quantitative understanding of growing shapes: GFtbox| '''Growing''']] complex biological shapes from patterns of gene expression==
{| border="0" width=100% style="background-color:#000000;"
|-
|align="center"|
[[Image:LabelledCropped GPT Snapdragon 2010-000340-0001.png|120px]]
[[Image:LabelledCropped GPT Snapdragon 2010-000490-0001.png|120px]]
[[Image:LabelledCropped GPT Snapdragon 2010-000570-0002.png|120px]]
[[Image:LabelledCropped GPT Snapdragon 2010-000570-0007.png|120px]]
[[Image:LabelledCropped GPT Snapdragon 2010-000570-0003 double.png|100px]]
[[Image:LabelledCropped GPT Snapdragon 2010-000570-0002 triple.png|120px]]
|}
 
[[Software#Quantitative understanding of growing shapes: GFtbox|'''MORE''']] 

==[[Software#Viewing and measuring volume images: VolViewer| '''Viewing''']] three dimensional volume (microscopy) images==
{| border="0" width=100% style="background-color:#000000;"
|-
|align="center"|
[[Image:Cs0prxz0.png|32x32px]]
[[Image:Leaf_trichomes.png|50px]]
[[Image:Cs0prxz0.png|50px]]
[[Image:GL2_GUS.png|50px]]
[[Image:Leaf5.png|50px]]
[[Image:OleosinSeed.png|50px]]
[[Image:OPT_Leaf_copy.png|50px]]
[[Image:Seedling_copy.png|50px]]
[[Image:Snapdragon_Peloric_mutant.png|50px]]
[[Image:Tissue.png|50px]]
[[Image:Z9r3j2yx.png|50px]]
[[Image:1896_wh_txr_light.png|50px]]
[[Image:Ara_flower.png|50px]]
[[Image:Arableaf_ath8_OPT.png|50px]]
|}
 
[[Software#Viewing and measuring volume images: VolViewer|'''MORE''']]

==[[Software#Analysing shapes in 2D and 3D: AAMToolbox|'''Analysing''']] shapes: faces, leaves and flowers==
{| border="0" width=100% style="background-color:#000000;"
|-
[[Image:PortraitsMEANSsmaller.jpg|800px]]
|-}
 
[[Software#Analysing shapes in 2D and 3D: AAMToolbox|'''MORE''']] 
Have you seen the original paintings? Do they exist?. 

=Algorithms=

----
==[http://cmpdartsvr3.cmp.uea.ac.uk/wiki/BanghamLab/index.php/Software#MSERs.2C_extrema.2C_connected-set_filters_and_sieves '''Vision''':] MSER's, extrema, filter-banks, Sieves and '''Scale-space'''==
{| border="0" width=100% style="background-color:#ffffff;"
|-
|align="center"|
[[Image:Cameraman_iso_topview.jpg|300px|AAMToolbox]]
[[Image:Cameraman_iso_tree.jpg|300px|AAMToolbox]]
|}

[[Software#MSERs.2C_extrema.2C_connected-set_filters_and_sieves|'''MORE''']]

==[http://cmpdartsvr3.cmp.uea.ac.uk/wiki/BanghamLab/index.php/Software#Art.2C_extrema_of_light_and_shade:_PhotoArtMaster '''Applications''']' of non-linear filter banks (sieves) and the art of light and shade==
{| border="0" width=100% style="background-color:#ffffff;"
|-
|align="center"|
[[Image:Colour_sieve.jpg|600px|AAMToolbox]]
|}
These images were produced from photographs using '''ArtMaster''' (formally known as '''PhotoArtMaster'''). The software received many favourable reviews when it was released (e.g. [http://graphicssoft.about.com/cs/photoart/gr/photoartmasterg.htm "This software can give you a lot of satisfaction from your everyday photos"], [http://graphicssoft.about.com/library/products/aafpr_photoartmaster1.htm]

[http://cmpdartsvr3.cmp.uea.ac.uk/wiki/BanghamLab/index.php/Software#The_final_version_of_the_Windows_ArtMaster2.0_is_downloadable_here_with_no_support The final (so far unpublished) version of ArtMaster including code is downloadable from here.] I cannot provide support but quite of lot of documentation is available within [http://cmpdartsvr1.cmp.uea.ac.uk/downloads/software/SieveWebPages/a4a_2_screensize.pdf ''''this document''''' ]

[http://cmpdartsvr3.cmp.uea.ac.uk/wiki/BanghamLab/index.php/Software#Art.2C_extrema_of_light_and_shade:_PhotoArtMaster '''MORE''']

==[[Software#Reaction-diffusion and morphogenesis| '''Reaction-diffusion''']] and morphogenesis - the growth of shapes==
{| border="0" width=100% style="background-color:#000000;"
|-
|align="center"|
[[Image:tentacles_reaction_diffusion.png|400px]]
[[Image:tentacles_morphogenesis.png|600px]]
|}
This image forms part of a 'journey' in the Science Museum of London's 'Journeys of Invention' [http://www.sciencemuseum.org.uk/journeys iPad app.] 
[[Software#Reaction-diffusion and morphogenesis|'''MORE''']] 

=[[Andrew personal | Andrew outside activities]]

Main Page

2014-10-27T12:02:45Z

Keg06xau:

=[http://www.uea.ac.uk/computing/People/Honorary/Andrew+Bangham Bangham at UEA]=

=Computational biology=

----

==[[Software#Quantitative understanding of growing shapes: GFtbox| '''Growing''']] complex biological shapes from patterns of gene expression==
{| border="0" width=100% style="background-color:#000000;"
|-
|align="center"|
[[Image:LabelledCropped GPT Snapdragon 2010-000340-0001.png|120px]]
[[Image:LabelledCropped GPT Snapdragon 2010-000490-0001.png|120px]]
[[Image:LabelledCropped GPT Snapdragon 2010-000570-0002.png|120px]]
[[Image:LabelledCropped GPT Snapdragon 2010-000570-0007.png|120px]]
[[Image:LabelledCropped GPT Snapdragon 2010-000570-0003 double.png|100px]]
[[Image:LabelledCropped GPT Snapdragon 2010-000570-0002 triple.png|120px]]
|}
 
[[Software#Quantitative understanding of growing shapes: GFtbox|'''MORE''']] 

==[[Software#Viewing and measuring volume images: VolViewer| '''Viewing''']] three dimensional volume (microscopy) images==
{| border="0" width=100% style="background-color:#000000;"
|-
|align="center"|
[[Image:Cs0prxz0.png|32x32px]]
[[Image:Leaf_trichomes.png|50px]]
[[Image:Cs0prxz0.png|50px]]
[[Image:GL2_GUS.png|50px]]
[[Image:Leaf5.png|50px]]
[[Image:OleosinSeed.png|50px]]
[[Image:OPT_Leaf_copy.png|50px]]
[[Image:Seedling_copy.png|50px]]
[[Image:Snapdragon_Peloric_mutant.png|50px]]
[[Image:Tissue.png|50px]]
[[Image:Z9r3j2yx.png|50px]]
[[Image:1896_wh_txr_light.png|50px]]
[[Image:Ara_flower.png|50px]]
[[Image:Arableaf_ath8_OPT.png|50px]]
|}
 
[[Software#Viewing and measuring volume images: VolViewer|'''MORE''']]

==[[Software#Analysing shapes in 2D and 3D: AAMToolbox|'''Analysing''']] shapes: faces, leaves and flowers==
{| border="0" width=100% style="background-color:#000000;"
|-
[[Image:PortraitsMEANSsmaller.jpg|800px]]
|-}
 
[[Software#Analysing shapes in 2D and 3D: AAMToolbox|'''MORE''']] 
Have you seen the original paintings? Do they exist?. 

=Algorithms=

----
==[http://cmpdartsvr3.cmp.uea.ac.uk/wiki/BanghamLab/index.php/Software#MSERs.2C_extrema.2C_connected-set_filters_and_sieves '''Vision''':] MSER's, extrema, filter-banks, Sieves and '''Scale-space'''==
{| border="0" width=100% style="background-color:#ffffff;"
|-
|align="center"|
[[Image:Cameraman_iso_topview.jpg|300px|AAMToolbox]]
[[Image:Cameraman_iso_tree.jpg|300px|AAMToolbox]]
|}

[[Software#MSERs.2C_extrema.2C_connected-set_filters_and_sieves|'''MORE''']]

==[http://cmpdartsvr3.cmp.uea.ac.uk/wiki/BanghamLab/index.php/Software#Art.2C_extrema_of_light_and_shade:_PhotoArtMaster '''Applications''']' of non-linear filter banks (sieves) and the art of light and shade==
{| border="0" width=100% style="background-color:#ffffff;"
|-
|align="center"|
[[Image:Colour_sieve.jpg|600px|AAMToolbox]]
|}
These images were produced from photographs using '''ArtMaster''' (formally known as '''PhotoArtMaster'''). The software received many favourable reviews when it was released (e.g. [http://graphicssoft.about.com/cs/photoart/gr/photoartmasterg.htm "This software can give you a lot of satisfaction from your everyday photos"], [http://graphicssoft.about.com/library/products/aafpr_photoartmaster1.htm]

[http://cmpdartsvr3.cmp.uea.ac.uk/wiki/BanghamLab/index.php/Software#The_final_version_of_the_Windows_ArtMaster2.0_is_downloadable_here_with_no_support The final (so far unpublished) version of ArtMaster including code is downloadable from here.] I cannot provide support but quite of lot of documentation is available within [http://cmpdartsvr1.cmp.uea.ac.uk/downloads/software/SieveWebPages/a4a_2_screensize.pdf ''''this document''''' ]

[http://cmpdartsvr3.cmp.uea.ac.uk/wiki/BanghamLab/index.php/Software#Art.2C_extrema_of_light_and_shade:_PhotoArtMaster '''MORE''']

==[[Software#Reaction-diffusion and morphogenesis| '''Reaction-diffusion''']] and morphogenesis - the growth of shapes==
{| border="0" width=100% style="background-color:#000000;"
|-
|align="center"|
[[Image:tentacles_reaction_diffusion.png|400px]]
[[Image:tentacles_morphogenesis.png|600px]]
|}
This image forms part of a 'journey' in the Science Museum of London's 'Journeys of Invention' [http://www.sciencemuseum.org.uk/journeys iPad app.] 
[[Software#Reaction-diffusion and morphogenesis|'''MORE''']] 

=[[Andrew personal | Andrew outside activities]]

Main Page

2014-10-27T12:02:11Z

Keg06xau:

Collaborators

2014-10-27T11:39:38Z

Keg06xau:

Labmembers

2014-10-27T11:36:36Z

Keg06xau: