#
# readers.txt
#

# OME Bio-Formats package for reading and converting biological file formats.
# Copyright (C) 2005-@year@ UW-Madison LOCI and Glencoe Software, Inc.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA

# This document is a configuration file identifying all file format readers
# available to Bio-Formats, and the order in which they should be used.
# Please do not edit unless you know what you are doing (see reader-guide.txt).

# javax.imageio readers
loci.formats.in.APNGReader            # png [javax.imageio]
loci.formats.in.JPEGReader            # jpg, jpeg [javax.imageio]

# standalone readers with unique file extensions
loci.formats.in.PGMReader             # pgm
loci.formats.in.FitsReader            # fits
loci.formats.in.PCXReader             # pcx
loci.formats.in.GIFReader             # gif
loci.formats.in.BMPReader             # bmp
loci.formats.in.DicomReader           # dcm, dicom
loci.formats.in.IPLabReader           # ipl
loci.formats.in.IvisionReader         # ipm
loci.formats.in.DeltavisionReader     # dv, r3d
loci.formats.in.MRCReader             # mrc
loci.formats.in.GatanReader           # dm3
loci.formats.in.ImarisReader          # ims
loci.formats.in.OpenlabRawReader      # raw
loci.formats.in.OMEXMLReader          # ome
loci.formats.in.LIFReader             # lif
loci.formats.in.AVIReader             # avi
loci.formats.in.PictReader            # pict, pct
loci.formats.in.SDTReader             # sdt
loci.formats.in.EPSReader             # eps, epsi
loci.formats.in.SlidebookReader       # sld
loci.formats.in.AliconaReader         # al3d
loci.formats.in.MNGReader             # mng
loci.formats.in.KhorosReader          # xv
loci.formats.in.VisitechReader        # html, xys
loci.formats.in.LIMReader             # lim
loci.formats.in.PSDReader             # psd
loci.formats.in.InCellReader          # xdce
loci.formats.in.L2DReader             # l2d
loci.formats.in.FEIReader             # img
loci.formats.in.NAFReader             # naf
loci.formats.in.MINCReader            # mnc
loci.formats.in.QTReader              # mov
loci.formats.in.MRWReader             # mrw
loci.formats.in.TillVisionReader      # vws
loci.formats.in.ARFReader             # arf

# multi-extension messes
loci.formats.in.AnalyzeReader         # hdr, img
loci.formats.in.APLReader             # apl, mtb, tnb
loci.formats.in.NRRDReader            # nrrd, nhdr, pic
loci.formats.in.ICSReader             # ics, ids
loci.formats.in.PerkinElmerReader     # rec, ano, csv, htm, tim, zpo, 2, 3, ...

# standard PIC reader must go last (it accepts any PIC)
loci.formats.in.BioRadReader          # pic

# readers requiring third-party libraries
loci.formats.in.FV1000Reader          # oib, oif, various
loci.formats.in.ZeissZVIReader        # zvi [POIFS]
loci.formats.in.IPWReader             # ipw [POIFS]
loci.formats.in.ND2Reader             # nd2, jp2 [JAI-ImageIO]
loci.formats.in.PCIReader             # cxd [POIFS]
loci.formats.in.ImarisHDFReader       # ims

# TIFF-based readers with unique file extensions
loci.formats.in.MetamorphReader       # stk
loci.formats.in.ZeissLSMReader        # lsm
loci.formats.in.SEQReader             # seq
loci.formats.in.GelReader             # gel
loci.formats.in.ImarisTiffReader      # ims
loci.formats.in.FlexReader            # flex
loci.formats.in.SVSReader             # svs

# TIFF-based readers with slow isThisType
loci.formats.in.TCSReader             # xml, tif
loci.formats.in.LeicaReader           # lei, tif
loci.formats.in.NikonReader           # nef, tif
loci.formats.in.FluoviewReader        # tif
loci.formats.in.PrairieReader         # xml, cfg, tif
loci.formats.in.MicromanagerReader    # txt, tif
loci.formats.in.ImprovisionTiffReader # tif
loci.formats.in.MetamorphTiffReader   # tif
loci.formats.in.OMETiffReader         # tif

# standard TIFF reader must go last (it accepts any TIFF)
loci.formats.in.TiffReader            # tif, tiff

# non-TIFF readers with slow isThisType
loci.formats.in.OpenlabReader         # liff
